Package: FSAP

FSAP - Sequence analysis tools
Documentation
Data
Platforms: linux-intel, solaris-sparc, solaris-amd64, linux-x86_64
Installation: BIRCH
Programs:
bachrest - Restriction site search (batch) d3hom - Dot-matrix DNA similarity, k=3 d4hom - Dot-matrix DNA similarity, k=4 funnel - Reformats a free-format or FASTA-format file to a fixed line-length, preserving comments that begin with a semicolon (;) gel - Given migration distances for standards of know size, calculate sizes of unknown fragments intrest - Restriction site search multidigest - Calculates restriction sites, fragments and fragment ends for multiple enzyme digests, complete or partial numseq - Sequence dislpay and manipulation p1hom - Dot-matrix protein similarity, k=1 p2hom - Dot-matrix protein similarity, k=2 prostat - Calculates amino acid frequencies for one or more proteins testcode - Find protein coding regions using method of Fickett